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mus musculus
•
reset
0
votes
0
replies
3.3k
views
build TSS from biomaRt for ChIPpeakAnno, how to decide the mm9 and mm10 assembly?
Mus musculus
biomaRt
ChIPpeakAnno
Mus musculus
biomaRt
ChIPpeakAnno
11.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
2.1k
views
Bioconductor Digest, Vol 121, Issue 13
RNASeq
Microarray
Normalization
GO
Classification
Clustering
Cancer
Mus musculus
probe
GO
11.1 years ago
Matthew Thornton
▴ 350
0
votes
2
replies
1.9k
views
BSgenome.Mmusculus.UCSC.mm10 and upstream sequences.
Mus musculus
BSgenome
BSgenome
Mus musculus
BSgenome
BSgenome
updated 10.5 years ago by
Hervé Pagès
16k • written 10.5 years ago by
Diego Diez
▴ 760
0
votes
2
replies
1.8k
views
GenomeinfoDB
Mus musculus
GenomeInfoDb
Mus musculus
GenomeInfoDb
updated 9.8 years ago by
Sonali Arora
▴ 390 • written 9.8 years ago by
Guest User
★ 13k
0
votes
1
reply
1.6k
views
GenomeGraphs/biomaRt/getBM on older genome builds
Mus musculus
biomaRt
GenomeGraphs
Mus musculus
biomaRt
GenomeGraphs
updated 14.9 years ago by
steffen@stat.Berkeley.EDU
▴ 600 • written 14.9 years ago by
Mark Robinson
★ 1.1k
0
votes
1
reply
1.5k
views
decideTests and topTable
Microarray
Mus musculus
limma
Microarray
Mus musculus
limma
updated 19.0 years ago by
Gordon Smyth
50k • written 19.0 years ago by
Humberto Ortiz Zuazaga
▴ 10
0
votes
2
replies
1.4k
views
lumiR returns ExpressionSet object instead of LumiBatch
GO
Mus musculus
BSgenome
BSgenome
lumi
GO
Mus musculus
BSgenome
BSgenome
lumi
updated 10.8 years ago by
Pan Du
▴ 440 • written 10.8 years ago by
Guest User
★ 13k
0
votes
2
replies
1.3k
views
mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
GO
Mus musculus
PROcess
topGO
GO
Mus musculus
PROcess
topGO
updated 14.2 years ago by
Sean Davis
21k • written 14.2 years ago by
Dick Beyer
★ 1.4k
0
votes
0
replies
1.2k
views
mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
Annotation
GO
Mus musculus
PROcess
topGO
Annotation
GO
Mus musculus
PROcess
topGO
14.2 years ago
Dick Beyer
★ 1.4k
0
votes
1
reply
1.2k
views
organism = mouse or Mus Musculus in AnnBuilder
Microarray
Organism
Mus musculus
AnnBuilder
Microarray
Organism
Mus musculus
AnnBuilder
updated 18.9 years ago by
John Zhang
★ 2.9k • written 18.9 years ago by
Christopher Wilkinson
▴ 140
1
vote
3
replies
1.2k
views
biomaRT biotype TFs only
biomart
TF
biotype
ensembl
mus musculus
updated 6.3 years ago by
Mike Smith
★ 6.5k • written 6.3 years ago by
rbronste
▴ 60
0
votes
0
replies
1.2k
views
confusion about nomenclature of illumina annotationpackages
BiocViews
Annotation
Cancer
Mus musculus
illuminaHumanv1
illuminaHumanv2
probe
annotate
15.8 years ago
Lynn Amon
▴ 280
0
votes
0
replies
1.1k
views
control probes and missing annotations in Affy Mouse Gene 1.0 ST arrays
Annotation
Mus musculus
probe
affy
Annotation
Mus musculus
probe
affy
14.4 years ago
Robert Castelo
★ 3.3k
0
votes
1
reply
955
views
How to download All Protein Protein Interactions of an organism with Bioconductor
ppi
stringdb
mus musculus
updated 6.1 years ago by
damian.szk
▴ 80 • written 6.1 years ago by
hkarakurt
▴ 20
14 results • Page
1 of 1
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Comment: Why p value inconsistent when using different number of pathway score?
by
Chris
• 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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